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See Peptides for the peptide files.
| Species | Type | #Seqs | File(s) |
|
Reed
Phragmites Australis PaR | 454 reads | 336,514 | PaRp_tip.fasta.gz,
PaRp_tip.qual.gz
PaRp_zone.fasta.gz, PaRp_zone.qual.gz |
| Illumina transcripts | 118,327 | PaRi_unitrans.fasta.gz | |
| Ilm+454 transcripts | 124,450 | PaRpi_unitrans.fasta.gz | |
|
Horsetail "scouring rush"
Eqisetum hymale EhR | 454 reads | 1,560,740 | EhRp_tip.fasta.gz,
EhRp_tip.qual.gz
EhRp_zone.fasta.gz, EhRp_zone.qual.gz |
| Illumina transcripts | 70,987 | EhRi_unitrans.fasta.gz | |
|
Red rice
Oryza longistaminata OlR | 454 reads | 225,382 | OlRp_tip.fasta.gz,
OlRp_tip.qual.gz
OlRp_zone.fasta.gz OlRp_zone.qual.gz |
| Illumina transcripts | 48,133 | OlRi_unitrans.fasta.gz | |
|
Ginger
Zingiber officinale (Line: GW) ZoR | Illumina transcripts | 73,123 | ZoRi_unitrans.fasta.gz |
|
Turmeric
Curcuma longa (Line: GW) ClR | Illumina transcripts | 78,516 | ClRi_unitrans.fasta.gz |
|
Quackgrass
Elytrigia repens ErR | 454 reads | 256,504 | ErRp_tip.fasta.gz, ErRp_tip.qual.gz |
|
Peppermint
Mentha x piperita MpR | 454 reads | 326,309 | MpRp_tip.fasta.gz, MpRp_tip.qual.gz |
File description
454 reads: All reads were sequenced by MSU. The "tip" is the reads from the rhizome apical meristem and the "zone" are the reads from the rhizome elognation zone.Illumina transcripts: All Illumina transcripts were sequenced and assembled by NCGR and contain both tip and zone libraries.
Ilm+454 transcripts: Using PAVE v3.0, the Illumina transcripts and PAVE assembled 454 transcripts were assembled.
